YOSSI ELIAZ

Research AssOCIATE

PhD in Physics, University of Houston

MSc in Computer Science, MBA, BSc in Computer Engineering and Physics, The Hebrew University of Jerusalem


yossi_eliaz{aaattt}hms{ddoott}harvard{ddoott}edu

RESEARCH 


PUBLICATIONS

[1] Barkai GA, Malul T, Eliaz Y, Eyal E, Veksler-Lublinsky I. OffRisk: a docker image for annotating CRISPR off-target sites in the human genome. Bioinform Adv. 2023; 3(1):vbad138.

[2] Hitz BC, Lee JW, Jolanki O, Kagda MS, Graham K, Sud P, Gabdank I, Strattan JS, Sloan CA, Dreszer T, Rowe LD, Podduturi NR, Malladi VS, Chan ET, Davidson JM, Ho M, Miyasato S, Simison M, Tanaka F, Luo Y, Whaling I, Hong EL, Lee BT, Sandstrom R, Rynes E, Nelson J, Nishida A, Ingersoll A, Buckley M, Frerker M, Kim DS, Boley N, Trout D, Dobin A, Rahmanian S, Wyman D, Balderrama-Gutierrez G, Reese F, Durand NC, Dudchenko O, Weisz D, Rao SSP, Blackburn A, Gkountaroulis D, Sadr M, Olshansky M, Eliaz Y, Nguyen D, Bochkov I, Shamim MS, Mahajan R, Aiden E, Gingeras T, Heath S, Hirst M, Kent WJ, Kundaje A, Mortazavi A, Wold B, Cherry JM. The ENCODE Uniform Analysis Pipelines. Res Sq. 2023 Jul 19.

[3] Harris HL, Gu H, Olshansky M, Wang A, Farabella I, Eliaz Y, Kalluchi A, Krishna A, Jacobs M, Cauer G, Pham M, Rao SSP, Dudchenko O, Omer A, Mohajeri K, Kim S, Nichols MH, Davis ES, Gkountaroulis D, Udupa D, Aiden AP, Corces VG, Phanstiel DH, Noble WS, Nir G, Di Pierro M, Seo JS, Talkowski ME, Aiden EL, Rowley MJ. Chromatin alternates between A and B compartments at kilobase scale for subgenic organization. Nat Commun. 2023 06 06; 14(1):3303.

[4] Gilad Y, Eliaz Y, Yu Y, Dean AM, Han SJ, Qin L, O'Malley BW, Lonard DM. Reply to: Target expression is a relevant factor in synthetic lethal screens. Commun Biol. 2022 08 19; 5(1):836.

[5] Li C, Liman J, Eliaz Y, Cheung MS. Forecasting Avalanches in Branched Actomyosin Networks with Network Science and Machine Learning. J Phys Chem B. 2021 10 28; 125(42):11591-11605.

[6] Gilad Y, Eliaz Y, Yu Y, Dean AM, Han SJ, Qin L, O'Malley BW, Lonard DM. A genome-scale CRISPR Cas9 dropout screen identifies synthetically lethal targets in SRC-3 inhibited cancer cells. Commun Biol. 2021 03 25; 4(1):399.

[7] Kaushal A, Mohana G, Dorier J, Özdemir I, Omer A, Cousin P, Semenova A, Taschner M, Dergai O, Marzetta F, Iseli C, Eliaz Y, Weisz D, Shamim MS, Guex N, Lieberman Aiden E, Gambetta MC. CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions. Nat Commun. 2021 02 12; 12(1):1011.

[8] Eliaz Y, Nedelec F, Morrison G, Levine H, Cheung MS. Insights from graph theory on the morphologies of actomyosin networks with multilinkers. Phys Rev E. 2020 Dec; 102(6-1):062420.

[9] Liman J, Bueno C, Eliaz Y, Schafer NP, Waxham MN, Wolynes PG, Levine H, Cheung MS. The role of the Arp2/3 complex in shaping the dynamics and structures of branched actomyosin networks. Proc Natl Acad Sci U S A. 2020 05 19; 117(20):10825-10831.

[10] Gilad Y, Eliaz Y, Yu Y, Han SJ, O'Malley BW, Lonard DM. Author Correction: Drug-induced PD-L1 expression and cell stress response in breast cancer cells can be balanced by drug combination. Sci Rep. 2020 Mar 05; 10(1):4463.

[11] Gilad Y, Eliaz Y, Yu Y, Han SJ, O'Malley BW, Lonard DM. Drug-induced PD-L1 expression and cell stress response in breast cancer cells can be balanced by drug combination. Sci Rep. 2019 10 22; 9(1):15099.

[12] Zegarra FC, Homouz D, Eliaz Y, Gasic AG, Cheung MS. Impact of hydrodynamic interactions on protein folding rates depends on temperature. Phys Rev E. 2018 Mar; 97(3-1):032402.